PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G004466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25368.2 Da PI: 9.8707 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+WvAeIr+p +r++lg+f tae+Aa+a+++a+ ++g HL.SW.v1.0.G004466.1 5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRVWLGTFETAEDAARAYDEAAVLMNG 55 59*******9.**********8.....334*********************977765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.36E-33 | 5 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-33 | 6 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-12 | 6 | 51 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.194 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-38 | 6 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVQPKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE DAARAYDEAA VLMNGRNAKT 60 NFPVPDQITA AASATATSAE QDRNNNTNNK ASALSELLKS KLRKCGLKTP SSRSLTCLRL 120 DTESCCIGVW QKRGGSGGGG YQRSDTKNNN NISNTSSNAS TTTATTTPQK DNSKWVLTIE 180 FGKVMNGGGC GQRGSSSEST SPAAFEEGGS SRSTQEEENR AALQMIEELL MSTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 5 | 64 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381116.1 | 2e-63 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 4e-62 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A2P5EU15 | 1e-80 | A0A2P5EU15_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_002524500.1 | 9e-62 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 9e-46 | ERF family protein |