PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004113.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 399aa    MW: 44338.1 Da    PI: 5.8762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004113.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30206264259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+ +++tY+g+H+h+
  HL.SW.v1.0.G004113.1 206 TDLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPESFVVTYTGDHTHP 264
                           699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30191266IPR003657WRKY domain
SuperFamilySSF1182904.45E-26199266IPR003657WRKY domain
PROSITE profilePS5081133.453200266IPR003657WRKY domain
SMARTSM007746.4E-37205265IPR003657WRKY domain
PfamPF031061.6E-25207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKGGQTTSSS EDTLSCLASL TFEEENDPFS FPNLVAEPRT NTFEELQQFY KPFFSNNSPT  60
TITGTTTTTA QGIIPNSPIS DFGGSSGQHL LHYQEQHHQQ QQQHLGTPND AAVRPQFMHP  120
QPYISGFGRL HGRRQYQLRE LDRNNQVPVL LLKPDHRAKA TTPTTTLPLP PFQLPTMPIS  180
HTPRSRKRKN QQKKMVCHVS AENLSTDLWA WRKYGQKPIK GSPYPRNYYR CSSSKGCAAR  240
KQVERSNTDP ESFVVTYTGD HTHPRPTHRN SLAGSTRNKL SPPPNITAIT KKDIMGSDHS  300
PSPTQSTSKL SPTTQLTVAQ TEEYAAAKLQ LEENESGEGD GGEKQSDDIL LEEELMDLDE  360
NEEDEDDDDD VLIPNMSLSE DFFLGLKELG CSPPGAAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-192072671880Disease resistance protein RRS1
5w3x_D3e-192072671880Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878306.11e-115probable WRKY transcription factor 27
TrEMBLA0A2P5CB071e-147A0A2P5CB07_PARAD; WRKY domain containing protein
STRINGXP_010105730.11e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-59WRKY DNA-binding protein 27