PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G003000.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 877aa MW: 100771 Da PI: 5.7085

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G003000.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.6e-23	124	209	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA+ vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ ++r+ +t+Cka +++k++ dgkw ++++ +eHnHe+ HL.SW.v1.0.G003000.1 124 SFYREYARFVGFGITIKASRRSKKSGKFIDIKVACSRFGNKRESGTS----VNPRPCIKTDCKAGMHIKRKGDGKWIIHSFMKEHNHEI 208 5**************************************999887....9*********************************98 PP FAR1 90 a 90 HL.SW.v1.0.G003000.1 209 Y 209 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-20	124	209	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-27	292	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.359	572	608	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-7	572	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	583	610	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MADFEDQVKW NQMTFSVEQD SSFFPMEIDL ELPSCEQDKL DIGSNSRADV VDNTVGIDIE 60 EEPVDSPGFS ECDEEDHESN ADQNISSYQD PVDFNTVGVD VVNKGSTCEP CNGLEFESKE 120 EAYSFYREYA RFVGFGITIK ASRRSKKSGK FIDIKVACSR FGNKRESGTS VNPRPCIKTD 180 CKAGMHIKRK GDGKWIIHSF MKEHNHEIYP DDFYYAINRK SKQSIVAAYQ KKGLQLALED 240 EDIQLMLDFF MHKQEESHDF FYSIDLDHEK RLKSVLWVDA KGRNEYSSFC DVVFFDTFYV 300 ANKYKIPFVP IVGVNHHCQY FLLGCALIGE ETTPAFVWLM RTWLKAVGGL APRVIISDQD 360 NFLKEAAADV FPDARHCFCL WHVLGRIPGN LSCEMNQKEK FIENFHECIH RSWTDEQFEM 420 KWWKMVERFD LREDVWIQSL YEDRKSWVPT YMKDLFLAGM STNVRSESLC SFFDGYLSPV 480 TTVKELIELY KKILEDIYVM EANADFETQH KQRTLRSLSN FEKQTSLTYT DAIFKKFQLE 540 VLGVVSCHLQ KEGETEAAII YQVDDSKERQ NFLVAWNEEE FQISCLCRSF EYKGFLCRHA 600 LLVLQMSEVS VIPSHYILKR WTKDAKVKHT VSELPRRNLR LQRFNDLCKL ATKLGEEGSL 660 SSEAYHIAIQ ALEEVLKHCV DVNSSVQSSL GPSMSNVHSF VDAVENHGSI TGKSFKKKKM 720 YKKRKGESES GVTTRMQDSD PRMEHMSSRA DNLDNCYIPQ QEIQGVELDS GAQDVDGFYN 780 RHSIHGVGQF ESISTVHDGF YTHQQGLLGQ LHSVPTRAVH YGNQQCMQGL LGFRVPTVHG 840 CFDIQENLQD VQEQSVGSSQ YQNIAPKHQP DKHLSR*

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MADFEDQVKW NQMTFSVEQD SSFFPMEIDL ELPSCEQDKL DIGSNSRADV VDNTVGIDIE  60
EEPVDSPGFS ECDEEDHESN ADQNISSYQD PVDFNTVGVD VVNKGSTCEP CNGLEFESKE  120
EAYSFYREYA RFVGFGITIK ASRRSKKSGK FIDIKVACSR FGNKRESGTS VNPRPCIKTD  180
CKAGMHIKRK GDGKWIIHSF MKEHNHEIYP DDFYYAINRK SKQSIVAAYQ KKGLQLALED  240
EDIQLMLDFF MHKQEESHDF FYSIDLDHEK RLKSVLWVDA KGRNEYSSFC DVVFFDTFYV  300
ANKYKIPFVP IVGVNHHCQY FLLGCALIGE ETTPAFVWLM RTWLKAVGGL APRVIISDQD  360
NFLKEAAADV FPDARHCFCL WHVLGRIPGN LSCEMNQKEK FIENFHECIH RSWTDEQFEM  420
KWWKMVERFD LREDVWIQSL YEDRKSWVPT YMKDLFLAGM STNVRSESLC SFFDGYLSPV  480
TTVKELIELY KKILEDIYVM EANADFETQH KQRTLRSLSN FEKQTSLTYT DAIFKKFQLE  540
VLGVVSCHLQ KEGETEAAII YQVDDSKERQ NFLVAWNEEE FQISCLCRSF EYKGFLCRHA  600
LLVLQMSEVS VIPSHYILKR WTKDAKVKHT VSELPRRNLR LQRFNDLCKL ATKLGEEGSL  660
SSEAYHIAIQ ALEEVLKHCV DVNSSVQSSL GPSMSNVHSF VDAVENHGSI TGKSFKKKKM  720
YKKRKGESES GVTTRMQDSD PRMEHMSSRA DNLDNCYIPQ QEIQGVELDS GAQDVDGFYN  780
RHSIHGVGQF ESISTVHDGF YTHQQGLLGQ LHSVPTRAVH YGNQQCMQGL LGFRVPTVHG  840
CFDIQENLQD VQEQSVGSSQ YQNIAPKHQP DKHLSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019199.1	0.0	protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2I4HFL5	0.0	A0A2I4HFL5_JUGRE; protein FAR1-RELATED SEQUENCE 2-like isoform X1
STRING	XP_008229651.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2