PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002678.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 663aa MW: 76529.6 Da PI: 6.8052

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002678.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2e-24	42	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ Hn HL.SW.v1.0.G002678.1 42 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHN 129 69******************8888.**************************************998766789******* PP FAR1 87 Hela 90 Hel HL.SW.v1.0.G002678.1 130 HELL 133 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-22	42	133	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-20	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.582	537	572	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.5E-9	540	571	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-7	547	574	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MLKLKVFQIY VKTEMITSSS PVEAVFTPYV GQIFRSDDDA FEYYSNFARK NGFSIRKARS 60 TESQNLGIYR RDFVCYRSGF NQPRKKANVE HPRERKSVRC GCDAKLYLTK EIVDGVTQWY 120 VSQFSNVHNH ELLEDDQVRL LPAYRKIHGA DQERILLLSK AGFPVNRIVK VLELEKGVQP 180 GQLPFIEKDV RNFVRTCKKA VQESDALLTE KRENDMLELV ESCKAMSIRD ADFIYEYTTD 240 EHGRVENIAW SCGKSVRAFT VFGDVIYLET SYRSLTHGLL LGVWFGIDNH GKAIVLGCVL 300 LQDESSHSLS WALQSFVQFM RGRHPQTILT DIDSGLRDAV ARELPNTKHV ICIWHVLSKI 360 SSWLSLPLGS QYAEFKSDFD MLCHHENIEE FEHQWNLLIA RYGLVSDKHI ALLYSFRASW 420 SFSYIRSYFL ACMMTTEFSQ CLESCMKRIL SVQTCLQVFF DQVSIVADSG NQIRDRMQYV 480 HIKTCMPIEE HARSILTPFA FHLLQHEIAL SMQYATTEMA NGSYIVRHYK KMDGECLVIW 540 IPDDVQIHCS CKEFEHSGIL CRHALRVLSV KNFFQLPDKY LMLRWRLESS LVLMNDHNFP 600 SSSDDCAQAF HSLAETIWTE SLAAKERFDY VHRELNVLLE HVQNMPVADE YASHMTANVS 660 DS*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MLKLKVFQIY VKTEMITSSS PVEAVFTPYV GQIFRSDDDA FEYYSNFARK NGFSIRKARS  60
TESQNLGIYR RDFVCYRSGF NQPRKKANVE HPRERKSVRC GCDAKLYLTK EIVDGVTQWY  120
VSQFSNVHNH ELLEDDQVRL LPAYRKIHGA DQERILLLSK AGFPVNRIVK VLELEKGVQP  180
GQLPFIEKDV RNFVRTCKKA VQESDALLTE KRENDMLELV ESCKAMSIRD ADFIYEYTTD  240
EHGRVENIAW SCGKSVRAFT VFGDVIYLET SYRSLTHGLL LGVWFGIDNH GKAIVLGCVL  300
LQDESSHSLS WALQSFVQFM RGRHPQTILT DIDSGLRDAV ARELPNTKHV ICIWHVLSKI  360
SSWLSLPLGS QYAEFKSDFD MLCHHENIEE FEHQWNLLIA RYGLVSDKHI ALLYSFRASW  420
SFSYIRSYFL ACMMTTEFSQ CLESCMKRIL SVQTCLQVFF DQVSIVADSG NQIRDRMQYV  480
HIKTCMPIEE HARSILTPFA FHLLQHEIAL SMQYATTEMA NGSYIVRHYK KMDGECLVIW  540
IPDDVQIHCS CKEFEHSGIL CRHALRVLSV KNFFQLPDKY LMLRWRLESS LVLMNDHNFP  600
SSSDDCAQAF HSLAETIWTE SLAAKERFDY VHRELNVLLE HVQNMPVADE YASHMTANVS  660
DS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026331.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024026332.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2N9IHM6	0.0	A0A2N9IHM6_FAGSY; Uncharacterized protein
STRING	EMJ18199	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]