PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002287.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 313aa MW: 35058.6 Da PI: 7.5394

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002287.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.6e-18	162	216	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Le+ F+++++++ +++++LA++l+L rqV vWFqNrRa+ k HL.SW.v1.0.G002287.1 162 RKKLRLTKRQSALLEDTFKEHNTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 216 788899***********************************************98 PP
2	HD-ZIP_I/II	119.3	2.1e-38	162	250	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k q++lLE++F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye +k+++++l+een+rL+ke ++L+ HL.SW.v1.0.G002287.1 162 RKKLRLTKRQSALLEDTFKEHNTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEADYELMKKCCETLTEENKRLRKELQDLK- 249 69*************************************************************************************9. PP HD-ZIP_I/II 90 e 90 + HL.SW.v1.0.G002287.1 250 S 250 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-17	148	216	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-18	153	219	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	158	218	IPR001356	Homeobox domain
SMART	SM00389	5.5E-16	160	222	IPR001356	Homeobox domain
CDD	cd00086	4.36E-15	161	219	No hit	No description
Pfam	PF00046	1.3E-15	162	216	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	193	216	IPR017970	Homeobox, conserved site
SMART	SM00340	1.2E-18	218	261	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.3E-8	218	251	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGSSNNGVSN TGLDLGLGNS QYHKAGDQNH DHENKKKLIW LRYDHVLPSL TLGTSSSSSS 60 EYDDDDAHHH HHQTVDQAYQ MTEILSSSSA HHHHHQDLHG RPANYTLSTV SSFSNSSTTV 120 KRDRSDGGGG GEEFEVEAEL ERFSGSRVST NDELDEDQAS PRKKLRLTKR QSALLEDTFK 180 EHNTLNPKQK QDLARQLNLR PRQVEVWFQN RRARTKLKQT EADYELMKKC CETLTEENKR 240 LRKELQDLKS LKVTAPFLVQ IPSTSATLTI CPSCERICGN GGHDGSSFLK IGAKPHHNSF 300 SKPFITNSSA AW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	218	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010109438.1	1e-103	homeobox-leucine zipper protein HAT22
Swissprot	P46604	5e-65	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2P5G132	1e-116	A0A2P5G132_TREOI; Octamer-binding transcription factor
STRING	XP_010109438.1	1e-102	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-63	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]