PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000710.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 395aa    MW: 42820.7 Da    PI: 10.4373
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000710.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.3e-1560142186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  v  L+ea+++++   +r+klk+ +We+v++++     +++  ++++qCk+k+e+++kry+ + + + +       ++p++++l
  HL.SW.v1.0.G000710.1  60 EWSEGAVSSLLEAYENKWVLRNRAKLKGLDWEDVARYVssraNSTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRL 141
                           5*************************************88777778889999**************99988876.......48888888 PP

              trihelix  86 e 86 
                           +
  HL.SW.v1.0.G000710.1 142 D 142
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1758142No hitNo description
SuperFamilySSF1014473.14E-5208219No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDKETNNHHH HHQESPSLLP NTTTAVAASA TAITVIPKEE SPRKPLSGGG GGGDRLKRDE  60
WSEGAVSSLL EAYENKWVLR NRAKLKGLDW EDVARYVSSR ANSTKSPKTQ TQCKNKIESM  120
KKRYRSESTA DASSWPLYSR LDLLLRGNGV PPTAAASAAV AVTTSSPAQP PLPPMPPSHP  180
PPHLHTNNSP LLLLEPTPVA VAMVPLPPPP PPPSPPPPPL HAAPPLIGAA QNSHGSNGVE  240
RLTKDDTGGI NKMLISDHAS DKNINNNSMD ITSGSSTPAL YSEKAEKIRS SSRKAGTAVN  300
KIMKRKRKKK RKEELEVAES IRWLAEAVLK SEQARIEAMR EIERMRVEAE AKRAEMELKR  360
TQIIANTQLE IAKLFASAVH VGKAVDSSLR IGRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302309MKRKRKKK
2303311KRKRKKKRK
3304308RKRKK
4304312RKRKKKRKE
5305311KRKKKRK
6306312RKKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095991.11e-148trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A2P5BX031e-172A0A2P5BX03_PARAD; Trihelix transcription factor
STRINGXP_010095991.11e-148(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-53sequence-specific DNA binding transcription factors