PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000593.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 137aa    MW: 15046.1 Da    PI: 8.7106
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000593.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19.2e-1770106135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  HL.SW.v1.0.G000593.1  70 CQHCGVSEhnTPAMRRGPAGPRTLCNACGLMWANKGT 106
                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.52464112IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-964117IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-1568111IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-1268114No hitNo description
CDDcd002028.68E-1469113No hitNo description
PROSITE patternPS0034407097IPR000679Zinc finger, GATA-type
PfamPF003201.2E-1470106IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAKSKDIVHR LLGNLLQEIL LFYYCRPPRM HRKNGQFASL KESSGTSGWD SSQSGPQDGT  60
NRPETVLRRC QHCGVSEHNT PAMRRGPAGP RTLCNACGLM WANKGTLRDL SKGGRNLCTD  120
LIEPFADPCG SQEDMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227470.24e-55GATA transcription factor 24
RefseqXP_008219237.14e-55PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL71e-27GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2P5EWB01e-57A0A2P5EWB0_TREOI; GATA transcription factor
STRINGXP_008219237.12e-54(Prunus mume)
STRINGEMJ286691e-54(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-24ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]