PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G000370.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 818aa MW: 90489.6 Da PI: 6.4359

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G000370.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	94	149	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k HL.SW.v1.0.G000370.1 94 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 149 688899***********************************************998 PP
2	START	155.4	4.7e-49	296	526	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetl 76 la + +elvk+ ++++p+Wv+ s en+ evl +e ++ +++ea r + vv+m++ +lv +++d + +W + HL.SW.v1.0.G000370.1 296 LAMSSVDELVKMCQSGSPLWVRKS--ENRREVLNVEEHARMfpwamnlkqndssdFKTEATRHTDVVIMNSITLVDSFVDGS-KWVDLF 381 5667889***************..***999988889************************************.999 PP S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE...TTS-EEEEEEEEE-TTS--..-TTSEE-EESSE CS START 77 a....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirq..lgagdwvivdvSvdseqkppe.sssvvRaellpS 150 + +a+tl+vi+ + g lqlm+aelq lsplvp R+ f+Ry+rq + + +wvivd vds ++ + ++s+ R +++pS HL.SW.v1.0.G000370.1 382 PsivsRAKTLQVITADasgqpinGSLQLMFAELQYLSPLVPtREAHFLRYCRQnsDHERTWVIVDFPVDSFHDVLQyQPSLPRYRRRPS 470 99999*********************************************999999***********99********* PP EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g++i++++ng+s+vtwveh++ +++ +h+ + ++v+sg+a+ga +w+a l+rqce+ HL.SW.v1.0.G000370.1 471 GCIIQDMPNGYSRVTWVEHAEIEEKPVHQTFSHFVQSGMAFGAPRWLALLKRQCER 526 ****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-19	82	152	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-21	90	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.957	91	151	IPR001356	Homeobox domain
SMART	SM00389	7.5E-19	92	155	IPR001356	Homeobox domain
CDD	cd00086	6.69E-18	94	152	No hit	No description
Pfam	PF00046	6.4E-18	94	149	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.647	286	529	IPR002913	START domain
SuperFamily	SSF55961	5.77E-30	287	528	No hit	No description
CDD	cd08875	2.66E-108	290	525	No hit	No description
SMART	SM00234	1.0E-35	295	526	IPR002913	START domain
Pfam	PF01852	4.7E-41	296	526	IPR002913	START domain
SuperFamily	SSF55961	9.61E-14	544	766	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MYGDCQVMSS MGGNVVSSET LFSSPIQNPN FNFISTMPFQ PFSSILPKEE NSLLHRGKDE 60 MLESGSGSEQ MEDKSGNEQE NSSDQLLLQQ QGKKKRYHRH TARQIQEMEA LFKECPHPDD 120 KQRMKLSQDL GLKPRQVKFW FQNRRTQMKA QQDRNDNQIL RAENETLKSE NFQLQAALRN 180 VSCPNCGGPA MIGDMGLDEQ QLRLENARLR EELDRVCCMT SRFTSRPMGG ISGAGPHHPL 240 MPPSLDLDMS IYSRHFPDHM AAGADHNIVP VPMMPQEPFP DNGLLLEEEK SLAIELAMSS 300 VDELVKMCQS GSPLWVRKSE NRREVLNVEE HARMFPWAMN LKQNDSSDFK TEATRHTDVV 360 IMNSITLVDS FVDGSKWVDL FPSIVSRAKT LQVITADASG QPINGSLQLM FAELQYLSPL 420 VPTREAHFLR YCRQNSDHER TWVIVDFPVD SFHDVLQYQP SLPRYRRRPS GCIIQDMPNG 480 YSRVTWVEHA EIEEKPVHQT FSHFVQSGMA FGAPRWLALL KRQCERVASL MARNISDLGV 540 MHSPESRKNM MKLSQRMLRT FCVNISTSGG QSWTAVSDSP DDTVRITTRK VTVPGQPNGL 600 ILSAVSTTWL PFPDYHVFDL LRDEGRRSQL EVLSNGSSLQ KIAHIANGSD PGNCISLLRI 660 NVASNSTQPV ELMLQESCTD KSGSVVVYST MEVDAIQLVM SGGDPSCIPI LPLGFVIVPA 720 ELASENNNNA TGKTGCLLTV GLQVLASTNP SARLSLPSVN AINNHLSNTV RQIMAALGGT 780 ATTITCADNG GSGSSSGVDH GTTTPATTAT TVAGPKQ*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MYGDCQVMSS MGGNVVSSET LFSSPIQNPN FNFISTMPFQ PFSSILPKEE NSLLHRGKDE  60
MLESGSGSEQ MEDKSGNEQE NSSDQLLLQQ QGKKKRYHRH TARQIQEMEA LFKECPHPDD  120
KQRMKLSQDL GLKPRQVKFW FQNRRTQMKA QQDRNDNQIL RAENETLKSE NFQLQAALRN  180
VSCPNCGGPA MIGDMGLDEQ QLRLENARLR EELDRVCCMT SRFTSRPMGG ISGAGPHHPL  240
MPPSLDLDMS IYSRHFPDHM AAGADHNIVP VPMMPQEPFP DNGLLLEEEK SLAIELAMSS  300
VDELVKMCQS GSPLWVRKSE NRREVLNVEE HARMFPWAMN LKQNDSSDFK TEATRHTDVV  360
IMNSITLVDS FVDGSKWVDL FPSIVSRAKT LQVITADASG QPINGSLQLM FAELQYLSPL  420
VPTREAHFLR YCRQNSDHER TWVIVDFPVD SFHDVLQYQP SLPRYRRRPS GCIIQDMPNG  480
YSRVTWVEHA EIEEKPVHQT FSHFVQSGMA FGAPRWLALL KRQCERVASL MARNISDLGV  540
MHSPESRKNM MKLSQRMLRT FCVNISTSGG QSWTAVSDSP DDTVRITTRK VTVPGQPNGL  600
ILSAVSTTWL PFPDYHVFDL LRDEGRRSQL EVLSNGSSLQ KIAHIANGSD PGNCISLLRI  660
NVASNSTQPV ELMLQESCTD KSGSVVVYST MEVDAIQLVM SGGDPSCIPI LPLGFVIVPA  720
ELASENNNNA TGKTGCLLTV GLQVLASTNP SARLSLPSVN AINNHLSNTV RQIMAALGGT  780
ATTITCADNG GSGSSSGVDH GTTTPATTAT TVAGPKQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096931.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_024021695.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A2P5EIR0	0.0	A0A2P5EIR0_TREOI; Octamer-binding transcription factor
STRING	XP_010096931.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10946	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]