PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G000091.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 332aa MW: 36882.5 Da PI: 6.2699

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G000091.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.6e-11	201	246	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ HL.SW.v1.0.G000091.1 201 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQSEVSALSPRVA 246 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.5E-14	197	261	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.772	199	251	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-9	201	246	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-14	201	252	No hit	No description
SuperFamily	SSF57959	1.27E-11	201	255	No hit	No description
CDD	cd14703	1.93E-24	202	252	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAQLPPKIPS MAQNWPNSFH HHQKLATMAS FATQQQPQQQ QQQPCWVDEF LDFTAARRGA 60 HRRSASDSIA FLESPLVEEC RNSAALMMMH GSFDRLDDDQ LMSMFSDDVS SAQAATAAAA 120 SNPSTPSSDQ NSNNNNNNNN ENDNKLFATM SLDHNQQQQQ QPKSEPGDVE DSPSEGEDHA 180 PPLNFSAAGT VSSGDTIFDP KRVKRILANR QSAQRSRVRK LQYISELERS VTTLQSEVSA 240 LSPRVAFLDH QRLILNVDNS ALKQRIAALA QDKIFKDAHQ EALKNEIERL RQVYHQQNIK 300 KMENHHHHPQ NAPSPTQNSD AAGDCTDNGA L*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229674	1e-104	KP229674.1 UNVERIFIED: Boehmeria nivea Basic leucine zipper transcription factor-like (bZIP08) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023876886.1	1e-132	basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-101	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A2P5F4X2	1e-135	A0A2P5F4X2_TREOI; Basic-leucine zipper transcription factor
STRING	EOY13162	1e-123	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2011	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-66	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]