PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD72016.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family AP2
Protein Properties Length: 158aa    MW: 17690.6 Da    PI: 5.3984
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD72016.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2285.4e-0968111149
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                 s+++GV+  + +grW+A+I  +   g rk++s g f ++e Aa+++++a
  KDD72016.1  68 SRFRGVS-GH-NGRWEARIGSF---GGRKNVSFGVFESEEAAARQYDRA 111
                 789***8.44.7******9997...336*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0032139IPR001471AP2/ERF domain
PROSITE profilePS5103211.192133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-10134IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-7233IPR016177DNA-binding domain
PROSITE profilePS5103212.53663125IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1168126IPR016177DNA-binding domain
CDDcd000188.26E-1468126No hitNo description
PfamPF008471.8E-468111IPR001471AP2/ERF domain
SMARTSM003805.5E-1369131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-1269125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
LYLGGFNSQE DAARAYDLAA LACKGADAVV NFAREEYAAQ LEEVAGFTRE EVVAYVRRRS  60
SAFSRGKSRF RGVSGHNGRW EARIGSFGGR KNVSFGVFES EEAAARQYDR ALILEKGRSA  120
KTNFPIRDYE IEVDEYEQSS IDPCVELRPL LRLNNDPP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851105.19e-73hypothetical protein CHLNCDRAFT_137655
TrEMBLA0A059LCT31e-110A0A059LCT3_9CHLO; Uncharacterized protein (Fragment)
STRINGXP_005851105.14e-72(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-31related to AP2.7