PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008978
Common Namewus
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family WOX
Protein Properties Length: 293aa    MW: 33312.8 Da    PI: 8.0744
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S60829561PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-202788257
               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               ++R+t+t++q+++L+el+++   r p+a++++++A++l    +++ ++V++WFqN++a+e++
  Han008978 27 STRWTPTSDQIRILKELYYNngIRSPTADQIQRIAAQLrqygKIEGKNVFYWFQNHKARERQ 88
               58*****************8567*************************************97 PP
2Wus_type_Homeobox114.16.9e-372690265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
          Han008978 26 SSTRWTPTSDQIRILKELYYnNGIRSPTADQIQRIAAQLRQYGKIEGKNVFYWFQNHKARERQKK 90
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-122295IPR009057Homeodomain-like
PROSITE profilePS5007110.9322389IPR001356Homeobox domain
SMARTSM003891.4E-62593IPR001356Homeobox domain
CDDcd000861.12E-72890No hitNo description
PfamPF000468.1E-182888IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-82888IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
METQQQQADI QDFGNKNSNT YACRQSSTRW TPTSDQIRIL KELYYNNGIR SPTADQIQRI  60
AAQLRQYGKI EGKNVFYWFQ NHKARERQKK RFTPTAPPPP SHFSDHINHH LPNAAPMQIP  120
SHHHHYHHQE PPHVYAHPHK LYTTHHIGVG SSSQGVMGVG CGYGSVAMEK SFRKCSISPP  180
GESKATGGIG RNIGSRSRIS VDSCSFFDTI KPKTYEMFEN RDQDEEQGEP STEIETLPLF  240
PIHDGNHHDF FGMRTANLPL EQGTGGYYTG GSWYRSDERA SLELSLNSYG YYN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022006965.10.0protein WUSCHEL
TrEMBLI4EC230.0I4EC23_HELAN; Transcription factor WUS
STRINGEMJ043775e-72(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-42WOX family protein
Publications ? help Back to Top
  1. Salvini M, et al.
    Molecular analysis of a sunflower gene encoding an homologous of the B subunit of a CAAT binding factor.
    Mol. Biol. Rep., 2012. 39(6): p. 6449-65
    [PMID:22359114]