PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han008829 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | FAR1 | ||||||||||||
Protein Properties | Length: 177aa MW: 19745.2 Da PI: 9.7308 | ||||||||||||
Description | FAR1 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63 | 8.5e-20 | 39 | 113 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY Y++++GF++r+ + ++s+ +g++++r++vCskeg++++ rtgC a ++v++ ++gkw+++++++eHnH+l Han008829 39 EFYTLYGTQAGFKIRIGQLYRSRVDGSVISRRYVCSKEGFQTP--------------LRTGCPAFIRVQRGESGKWVLANVKTEHNHDL 113 6***************************************998..............489***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-9 | 39 | 80 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.7E-6 | 83 | 113 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTVRAKPGPA VFKPNEEGGE SRIEPYVGLE FDSAEAAQEF YTLYGTQAGF KIRIGQLYRS 60 RVDGSVISRR YVCSKEGFQT PLRTGCPAFI RVQRGESGKW VLANVKTEHN HDLDISGEIR 120 PPIIQRXTPP TPRPTSNVSS RTGIRSLEDE CPSGAIDLKR IKRVELDPAR EVNRAKV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022001699.1 | 1e-112 | protein FAR1-RELATED SEQUENCE 7-like | ||||
Swissprot | Q9M8J3 | 4e-46 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A251STX3 | 1e-110 | A0A251STX3_HELAN; Putative FAR1-related sequence 7 | ||||
STRING | Migut.N00138.1.p | 5e-71 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 8e-44 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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