PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han008712 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | HSF | ||||||||
Protein Properties | Length: 208aa MW: 24160.3 Da PI: 9.707 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 97.8 | 1e-30 | 2 | 86 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 +++d+++++++sw++ g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+kg+ke l++i+r+ks Han008712 2 LVDDPATDHVVSWNAAGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNERFHKGHKEVLCQIRRRKS 86 6899******************************************************999.........**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.8E-40 | 2 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-31 | 2 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-27 | 2 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.94E-28 | 2 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.2E-9 | 33 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 34 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-9 | 46 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MLVDDPATDH VVSWNAAGTG FVVWQPAEFA RDLLPTLFKH SNFSSFVRQL NTYGFRKVAT 60 SRWEFCNERF HKGHKEVLCQ IRRRKSWANK AQPVTQTLKE SDEDQRSSST NSLSSGYNIL 120 MDENHKLKNE NKVLCSELWS MRKKCKELLD LVSMYAASSS NKEEEDDQRP KLFGVRLEVH 180 GDKERKRKRH EEVSESARRI LLSVNANK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-16 | 2 | 84 | 27 | 120 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021988950.1 | 1e-154 | heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 5e-60 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A251TLG4 | 1e-153 | A0A251TLG4_HELAN; Putative heat shock transcription factor B3 | ||||
STRING | POPTR_0016s05680.1 | 1e-91 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 7e-59 | heat shock transcription factor B3 |