PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han008686

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

BBR-BPC

Protein Properties

Length: 270aa MW: 30362.1 Da PI: 5.9812

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S59508866	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-57285	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	273.5	1.1e-83	10	259	27	288
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavel 126 m+++aerda+i+ernlal e+k a+aerdma lqrd+alaern a+ erd+++ ++ +++n + + +++s t++ + q + ++ ++ Han008686 10 TFMAIMAERDAAIQERNLALEERKRAFAERDMAMLQRDAALAERNTAMQERDEAISTIRFRSNFI------NENMISTTSEPPENIQNHG---SKRGFND 100 68********************************************************88853......3455665555543333222...2333344 PP GAGA_bind 127 reeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 +e++++ + p + + +++k +k +kk+k++ + k+ ++++ +++ e+++++++ e + +l+ln+v++De+++PvPvCsCtG+++ CY+WG Han008686 101 EEMHHMFEIPEDYQLPPPENTKPRK---VPKKTKSQSPHVGSKRADVTNVNSDYEESSSDAQLEAWKDELGLNQVNFDETAMPVPVCSCTGVPQPCYRWG 197 4555555555333333333332222...33333333333333444444445555554445555555579*************************** PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdh 288 +GGWqSaCCttt+S+yPLP +t++r +R++grKmS+gaf+klL +La+eGydls+p+DLkd Han008686 198 SGGWQSACCTTTMSMYPLPLVTNKRYSRVGGRKMSGGAFTKLLTRLASEGYDLSTPLDLKDI 259 **********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-84	1	260	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.5E-77	9	260	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDHNHFTIKT FMAIMAERDA AIQERNLALE ERKRAFAERD MAMLQRDAAL AERNTAMQER 60 DEAISTIRFR SNFINENMIS TTSEPPENIQ NHGSKRGFND EEMHHMFEIP EDYQLPPPEN 120 TKPRKVPKKT KSQSPHVGSK RADVTNVNSD YEESSSDAQL EAWKDELGLN QVNFDETAMP 180 VPVCSCTGVP QPCYRWGSGG WQSACCTTTM SMYPLPLVTN KRYSRVGGRK MSGGAFTKLL 240 TRLASEGYDL STPLDLKDIG ANMVLTATSN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749248.1	1e-118	barley B recombinant-like protein D
Refseq	XP_023749254.1	1e-118	barley B recombinant-like protein D
Refseq	XP_023749259.1	1e-118	barley B recombinant-like protein D
Swissprot	Q8L999	3e-71	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	H1ZN81	0.0	H1ZN81_HELAN; GAGA-binding transcriptional activator
STRING	XP_009611977.1	1e-109	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-73	basic pentacysteine 6