PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Han007938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 166aa MW: 18610.8 Da PI: 6.7858 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43 | 9.6e-14 | 36 | 94 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+++NRe+ArrsR RK++ ++eL++ +L +eN ++++ + ++++ ++++e+ Han007938 36 RKKKRMISNRESARRSRMRKQKHLDELATQLSQLRKENNQMISSVTITTQHYMNVETEN 94 7899***************************************9998888888777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.8E-17 | 32 | 96 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.576 | 34 | 97 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.5E-11 | 35 | 111 | No hit | No description |
Pfam | PF00170 | 2.7E-11 | 36 | 93 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.0E-12 | 36 | 88 | No hit | No description |
CDD | cd14702 | 3.82E-19 | 37 | 88 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 39 | 54 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MASSSTTTGT SSGGSGPYPI QGSGSEKDLQ HVMDQRKKKR MISNRESARR SRMRKQKHLD 60 ELATQLSQLR KENNQMISSV TITTQHYMNV ETENRVLRAQ VAELSQQLQS LNEIIAFVNP 120 CVDSGCGFME EQYGSGTEFV DEFMSNSLSY VYANQAILAS ADMFMY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 35 | 56 | RKKKRMISNRESARRSRMRKQK |
2 | 48 | 55 | RRSRMRKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021998431.1 | 1e-122 | bZIP transcription factor 11-like | ||||
Swissprot | C0Z2L5 | 2e-40 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | A0A251T597 | 1e-120 | A0A251T597_HELAN; Putative basic leucine-zipper 2 | ||||
STRING | XP_004289640.1 | 3e-56 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75390.1 | 3e-42 | basic leucine-zipper 44 |
Publications ? help Back to Top | |||
---|---|---|---|
|