PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han007904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRAS | ||||||||
Protein Properties | Length: 169aa MW: 18649.2 Da PI: 8.3418 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 122.2 | 6.3e-38 | 31 | 131 | 275 | 374 |
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ s+e++++++++lg++i+nvvaceg +r+erhetl +W+ rl++aGF++v+l+++a kqa++ll+ ++ +dgyrv ee+g+l+lgW++rpL+++SaW Han007904 31 VSPVSSEDRFMSEVYLGKQICNVVACEGVDRVERHETLTQWKTRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVVEEEGCLMLGWHTRPLITTSAW 130 567789999******************************************************************************************* PP GRAS 374 r 374 + Han007904 131 K 131 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.74 | 1 | 110 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-35 | 31 | 131 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MAPLSPKKAR TTTCGAAVNG GVDVGVNGGG VSPVSSEDRF MSEVYLGKQI CNVVACEGVD 60 RVERHETLTQ WKTRLDSAGF EAVHLGSNAF KQASMLLALF AGGDGYRVVE EEGCLMLGWH 120 TRPLITTSAW KIGELGRNHS SIDSVGSESN TRVTHWWWWI TRYIKRFFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-11 | 35 | 130 | 285 | 378 | Protein SCARECROW |
5b3h_A | 3e-11 | 35 | 130 | 284 | 377 | Protein SCARECROW |
5b3h_D | 3e-11 | 35 | 130 | 284 | 377 | Protein SCARECROW |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.436 | 1e-133 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022021440.1 | 3e-78 | DELLA protein GAI1-like | ||||
Swissprot | Q8S4W7 | 1e-54 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | E3TPY0 | 7e-80 | E3TPY0_HELAN; DELLA protein 2 (Fragment) | ||||
STRING | XP_008221422.1 | 6e-56 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 4e-53 | GRAS family protein |