PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007833
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family YABBY
Protein Properties Length: 173aa    MW: 19064.8 Da    PI: 7.7992
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S23519497PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY154.31.1e-47251696149
      YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes....lkeelleelkveeenlksnvekeesastsvssekl 101
                 s+q+C v+C+ C+t+lavsvP tslfk+vtvrCGhCt+ll vn+   + + +++++++      + ++ +  l ++ +n  sn   +++ + + s +  
  Han007833  25 CSDQLCCVHCTNCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMPGLM-IPPSVNQFHFGhnniFAPSSHTLLDDQISNGASNFLISQNYTGDFSLT-- 121
                69****************************************9987765.455555543320011333344444455555555555555555555543.. PP

      YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdish 149
                +     e+p++p ++rPPe+rqrvPsaynrfikeei+rika+nPdish
  Han007833 122 DLRGFGELPKPPVTNRPPEQRQRVPSAYNRFIKEEIHRIKAGNPDISH 169
                5677889***999*********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.2E-4726169IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSIFSSTTSP TIPHLLHHLP PPPSCSDQLC CVHCTNCDTV LAVSVPCTSL FKTVTVRCGH  60
CTNLLPVNMP GLMIPPSVNQ FHFGHNNIFA PSSHTLLDDQ ISNGASNFLI SQNYTGDFSL  120
TDLRGFGELP KPPVTNRPPE QRQRVPSAYN RFIKEEIHRI KAGNPDISHP RTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.65830.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}.
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021969003.11e-101axial regulator YABBY 5-like
SwissprotA2X7Q31e-41YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-41YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A251UG571e-100A0A251UG57_HELAN; Putative plant-specific transcription factor
STRINGPOPTR_0001s00240.14e-64(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-43YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]