PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han007260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | YABBY | ||||||||
Protein Properties | Length: 208aa MW: 23368.5 Da PI: 8.8882 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222.6 | 1.1e-68 | 8 | 176 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 dv+ +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ +a+ + s+ + ++ + +l+ ++ ++s + + + s+s+ s+++ Han007260 8 DVTATSEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMGMAAAFHQSLSNSNS-PSQDSTSHLHAQKAPTHSPNYRVDMGSSSKYSSRM 106 67889**********************************************9977777776333.33333333333333333333333333333333333 PP YABBY 102 senedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Han007260 107 PMRPSPVpFTADQKINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 176 333333203334559*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.8E-69 | 12 | 176 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 116 | 169 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 122 | 170 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSNISCIDVT ATSEQLCYIP CNFCNIVLAV SVPCSSLFDM VTVRCGHCTN LWSVNMGMAA 60 AFHQSLSNSN SPSQDSTSHL HAQKAPTHSP NYRVDMGSSS KYSSRMPMRP SPVPFTADQK 120 INRPPEKRQR VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP HIHFGLMLEA 180 NDHPAKLDEL TYVQGSEKRQ RSRAPFMK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 202 | KRQRSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021996680.1 | 1e-156 | axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q8GW46 | 1e-76 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A251T1Y1 | 1e-154 | A0A251T1Y1_HELAN; Putative plant-specific transcription factor YABBY family protein | ||||
STRING | VIT_11s0016g05590.t01 | 5e-88 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-72 | YABBY family protein |
Publications ? help Back to Top | |||
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