PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||
Protein Properties | Length: 228aa MW: 25944 Da PI: 6.0949 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 97 | 119 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++ rtG Ck+G++CkF+H+ Han006759 97 EDCAYYIRTGMCKFGSNCKFNHP 119 79********************8 PP | |||||||
2 | zf-CCCH | 19.3 | 2e-06 | 146 | 168 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++ + CkyG CkF+Hg+ Han006759 146 ECKYHTSSAGCKYGKACKFNHGR 168 799666666************96 PP | |||||||
3 | zf-CCCH | 25.7 | 1.9e-08 | 189 | 213 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G +yG++C+F+H+ Han006759 189 GEKECPYYMRNGSLQYGPSCRFNHP 213 7899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.72E-7 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-7 | 97 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-5 | 99 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.042 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-5 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 145 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 187 | 214 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.465 | 187 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEEEDPFGPK SQQQLPDSID NDHLVQILAQ DLQNLVLSCN QLEAESSSGT EKVDPNEFRV 60 LEDEDASVDE RVQDLENQTK NVKAAAAYHY LLRLDAEDCA YYIRTGMCKF GSNCKFNHPI 120 RRKIQPIKET KKQKEENVVE RHAQTECKYH TSSAGCKYGK ACKFNHGRGK SVKTPVAEYN 180 FLGLPIRPGE KECPYYMRNG SLQYGPSCRF NHPDPTAVWG DDVPHTMQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.8587 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022015344.1 | 1e-161 | zinc finger CCCH domain-containing protein 67-like | ||||
TrEMBL | A0A251RVH4 | 1e-160 | A0A251RVH4_HELAN; Putative zinc finger, CCCH-type | ||||
STRING | EOY22360 | 3e-60 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 7e-54 | C3H family protein |