PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 228aa MW: 25790.9 Da PI: 7.267 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.4 | 9.4e-24 | 100 | 195 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W + +v++Li+a+++++e+ + +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d ++ Han006749 100 KWNDLMVRLLITAVSYIGEDAADYGgsrrkfsnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLDLMD 195 7**************9998888632234556677**********************************************669******9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.5E-22 | 98 | 221 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEGGNLSSSG GSGGSFDLQR VHHHQQQGSM ILPCVHENFP FRIGTETIPD CNRTISLAAE 60 FGKGETRATS GEEDEPSFTA QDDRAKNVNM NFASPWQRVK WNDLMVRLLI TAVSYIGEDA 120 ADYGGSRRKF SNLQKKGKWK SVSKVMAERG HFVSPQQCED KFNDLNKRYK RLNEILGRGT 180 SCEVVENPSL LDLMDHVPEK LKEEVRKILS SKHLHYEEMC SYHNGDRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021997420.1 | 1e-156 | uncharacterized protein LOC110894505 | ||||
Refseq | XP_021997421.1 | 1e-156 | uncharacterized protein LOC110894505 | ||||
TrEMBL | A0A124SE09 | 1e-103 | A0A124SE09_CYNCS; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2J6LR10 | 1e-102 | A0A2J6LR10_LACSA; Uncharacterized protein | ||||
STRING | XP_009590352.1 | 1e-92 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 2e-75 | sequence-specific DNA binding transcription factors |