PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 27896.1 Da PI: 6.5816 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 78 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Han006447 78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 126 9*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.3E-39 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 77 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-12 | 78 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-12 | 78 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.81E-32 | 78 | 134 | No hit | No description |
PRINTS | PR00367 | 5.4E-12 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MCGGAIVSDL IRSSRRLKNS SSDVWPEFNP YEAEFNNAYE AEFNQFVQQT DSDYHKRPLP 60 YSGGMHETTR KKQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDKE 120 ARKIRGRKAK VNFPSDEEEE YFNRKNPNLN NYNDILLGFS DEEVMGPRLV KENEKKKKKV 180 EEVVRKEENE VQKLSEELMA YESYMKFYDI PYLEGQPSAV APANADGGGS IELWSFDDVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 78 | 134 | 6 | 63 | ATERF1 |
3gcc_A | 4e-21 | 78 | 134 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.6574 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021969365.1 | 1e-178 | ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A251UFG2 | 1e-176 | A0A251UFG2_HELAN; Putative integrase-type DNA-binding superfamily protein | ||||
STRING | XP_009608570.1 | 1e-68 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-44 | ERF family protein |