PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27391.9 Da PI: 7.8318 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.6e-14 | 98 | 142 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k+ G+g+W+ I+r + k+Rt+ q+ s+ qky Han006174 98 PWTEDEHKLFLLGLKKVGKGDWRGISRNFVKTRTPTQVASHAQKY 142 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.832 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-16 | 93 | 148 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-16 | 94 | 145 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.1E-10 | 95 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 97 | 142 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-11 | 98 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-9 | 98 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSESGCWANG QNPVGADGSG EIMLFGVRVK VDPMRKSVSM NDLSQYVHVQ QATHGDSSSN 60 SNNLDGSIAV AADSGYASAE DAVRNPSNVG RERKRGVPWT EDEHKLFLLG LKKVGKGDWR 120 GISRNFVKTR TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDSVAVIP MEEEQTHEDN 180 ATQPSAVGLI PSPPLSIKNQ TETVAFNTEY XXHTGPVSLS PTLHLSTRAD NYFDREHERD 240 SLSLSLSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.415 | 0.0 | bud| embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021983970.1 | 1e-154 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 4e-66 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A251U080 | 1e-152 | A0A251U080_HELAN; Putative myb domain, plant, Homeodomain-like protein | ||||
STRING | XP_008374494.1 | 4e-65 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 1e-43 | MYB_related family protein |
Publications ? help Back to Top | |||
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