PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRAS | ||||||||
Protein Properties | Length: 252aa MW: 28874.3 Da PI: 6.3078 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 117.6 | 1.6e-36 | 6 | 247 | 20 | 277 |
GRAS 20 aqalLarlselaspdgdpmqRlaa.yfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDf 117 a+ +++ ++e +p g+++ R+a+ f e ++ +++ +++ + a+++f++++P+ +f+++taN++Ileav + e vHi+Df Han006024 6 AKVIVKCIREKINPVGQTLDRIAFkLFGENQEEYINQ----------------ESMRNFKIAFRVFYDIFPYGRFAYFTANSTILEAVPAHvESVHIVDF 89 4555555555555555555555441233333333333................336677788999***********************9999******** PP GRAS 118 disqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlld 215 d ++G QWp +qa+a+ + sl iT ++ ++++ + ++t++ L +fA+++g++++ + + ++ +l ++ ++ ++ +E ++ n+++ l ++ Han006024 90 DPGEGSQWPQVIQAIAQM---KKSLIITSIKL-DQDQDSQFHQTRWHLCNFARTFGLNLKVQEI---EIGQL-VNLIEGRKsgKEFVVFNCMVGLPHMG- 180 ****************95...567*******9.668999***********************98...44444.3445544455***************8. PP GRAS 216 esvsleserdevLklvkslsPk...vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpr 277 ++ ++++ +++L++ k++ ++ ++++ + e ++ n++++ f + l +y al++s+e ++p+ Han006024 181 KTRKTNQ-VTDFLNVAKHVLAQnqgIITFGDGEeGERmgNHSDYPSFFDNNLAHYKALYESIECGFPS 247 4444444.79********9554444****9876444457999*********************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.726 | 1 | 252 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-34 | 6 | 247 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
XQTELAKVIV KCIREKINPV GQTLDRIAFK LFGENQEEYI NQESMRNFKI AFRVFYDIFP 60 YGRFAYFTAN STILEAVPAH VESVHIVDFD PGEGSQWPQV IQAIAQMKKS LIITSIKLDQ 120 DQDSQFHQTR WHLCNFARTF GLNLKVQEIE IGQLVNLIEG RKSGKEFVVF NCMVGLPHMG 180 KTRKTNQVTD FLNVAKHVLA QNQGIITFGD GEEGERMGNH SDYPSFFDNN LAHYKALYES 240 IECGFPSYLN EX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021985098.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A251TGY6 | 0.0 | A0A251TGY6_HELAN; Putative transcription factor GRAS | ||||
STRING | EOY07107 | 6e-80 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 6e-16 | GRAS family protein |