PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han005970

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

C3H

Protein Properties

Length: 254aa MW: 28598.9 Da PI: 4.5345

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48328558	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	43.6	5e-14	154	176	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C++++rtG CkyG++CkF+H+ Han005970 154 EDCSYYMRTGMCKYGSTCKFNHP 176 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.05E-6	150	178	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-6	150	177	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.774	150	178	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-10	154	176	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-6	156	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.695	203	226	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDHSSLGAKS PPPDSPLQSD SSIDSDKLLQ ILTQDFQTLV LSSNDAQPFH QHHSYPLATQ 60 DEDQIKQPPD DELVDKVTVN VNEAFEPESL YGAEEKILEE EDDDHKECRV LEERESEVAD 120 DEIGGYESEN VGGSSVSVVE DGKGYHYPLR PDAEDCSYYM RTGMCKYGST CKFNHPLRRK 180 HQQTSKETHK QKEENMEMHG QIECKYYLSP AGXQYGKSXQ FSHGRGKTVT TPVVEYNFLG 240 FAIPTGEKSV LLHA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021984094.1	1e-173	zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBL	A0A251U0I1	1e-169	A0A251U0I1_HELAN; Putative zinc finger C-x8-C-x5-C-x3-H type family protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	6e-31	C3H family protein