PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||
Protein Properties | Length: 265aa MW: 30508.1 Da PI: 5.9467 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 24 | 47 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Han005639 24 KSILCEFFKA-GQCAKGFKCKFSHD 47 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.14E-6 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 22 | 48 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 22 | 49 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 24 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9 | 92 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.784 | 92 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 3.3E-15 | 149 | 227 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
REGAXMICLD CCCSPKVPVG VDPKSILCEF FKAGQCAKGF KCKFSHDLNV QRKGEKIDIF 60 SDKRDEETME DWDLEMLEKV VASKGKEYNQ NKPTDIVCKH FLDAVEKKQY GWFWVCPNGN 120 KECHYRHALP PGYILKSQMK ALLEEEANKL AIEDEIEDQR SKVKTTTPMT TDLFVQWKKK 180 VDEKEAGLAA QRAERAKNDR MSGRELFLSD ASVFVDDAEA YEKYNREEEP DNTADXHKKI 240 HLQGGQVHQQ MWLLLLLKTG ILEIX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.9868 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021997902.1 | 1e-162 | zinc finger CCCH domain-containing protein 11-like | ||||
Swissprot | Q0JHZ2 | 1e-138 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A251T224 | 1e-161 | A0A251T224_HELAN; Putative zinc finger, CCCH-type, ZC3H15/TMA46 family | ||||
STRING | OB01G45080.1 | 1e-136 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-121 | C3H family protein |
Publications ? help Back to Top | |||
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