PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han005192

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

MYB_related

Protein Properties

Length: 280aa MW: 30830.2 Da PI: 4.5457

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-17767	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	23	72	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44 +W t+E++ll+ av+++G+++W++I++++ ++++ +c ++ Han005192 23 AWGTWEELLLAYAVNRYGTKSWDSISSELRkrsseptrFHLSPLHCEQKY 72 6*****************************55555555445555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.34E-5	17	60	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-4	20	78	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	22	56	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-9	23	75	IPR001005	SANT/Myb domain
CDD	cd00167	5.27E-6	23	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MAKSDHHSPP SDPKHSPPST AAAWGTWEEL LLAYAVNRYG TKSWDSISSE LRKRSSEPTR 60 FHLSPLHCEQ KYNELKQRFN HTDAVDIDDV TTTTTTTGTA AVPWLEELRN LRVLELQREL 120 QNYDLYISSL QLKVKKLTEE SENDVAGETN RNSDLGHETE KDEEPKNEPA EPVEPVVSGD 180 NQSVNGSNGN LETGGEKSEN ENGTGASPGR TGGENSEPVK SEPEEKEQRT GPDVEASEAP 240 ESIAESKSEG KNSDVQSSAS KSRKESIDRV RRGSTKGDEI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021972256.1	0.0	uncharacterized protein LOC110867585
TrEMBL	A0A251VMM4	0.0	A0A251VMM4_HELAN; Putative DNA-binding bromodomain-containing protein
STRING	EOY09477	2e-44	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	4e-19	DNA-binding bromodomain-containing protein