PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004749
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 304aa    MW: 35075.4 Da    PI: 9.5596
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-24453PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.7e-183883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
        Han004749 38 RGHWRPAEDEKLRQLVQLYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 83
                     899*****************************.***********996 PP
2Myb_DNA-binding49.97.4e-1690133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T eE+e+l+ a++ + ++ W++I+r ++ gRt+  +k++w+ 
        Han004749  90 RRPFTDEEEEKLLAAHRVHENR-WALISRLFP-GRTDDAVKNHWHV 133
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9713388IPR017930Myb domain
SMARTSM007171.1E-143786IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2737131IPR009057Homeodomain-like
PfamPF002492.2E-173883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-273991IPR009057Homeodomain-like
CDDcd001673.38E-134182No hitNo description
SMARTSM007178.4E-1489137IPR001005SANT/Myb domain
PROSITE profilePS512942089139IPR017930Myb domain
PfamPF002499.1E-1390132IPR001005SANT/Myb domain
CDDcd001671.97E-1092132No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1992138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
XAIIGTTSKL GIVSSIINHS FQLFMEETRS DDSRMCPRGH WRPAEDEKLR QLVQLYGPQN  60
WNSIAEKLQG RSGKSCRLRW FNQLDPRINR RPFTDEEEEK LLAAHRVHEN RWALISRLFP  120
GRTDDAVKNH WHVIMARKQR EKSKLCGKTR YEDDLQSSSK LKMNHGRDFL NSNKYSTSIS  180
FAAGLQLQND GIPSAWSFRD PNTMLDHKYL LKTAQGQIKN SSTSSRQNLL DHFGLQNHLS  240
SSGRYRYQCN EHIVPNEVVH PDNQLPKPVK TTLTFIEQDI VEEEAVKKKN DVPFIDFLGV  300
GICS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-30351381104C-Myb DNA-Binding Domain
1msf_C7e-30351381104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022017058.10.0transcription factor MYB52-like
TrEMBLA0A251VEU20.0A0A251VEU2_HELAN; Putative myb domain protein 69
STRINGVIT_18s0001g15260.t012e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-70myb domain protein 52