PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han004473

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

HB-other

Protein Properties

Length: 335aa MW: 37756.6 Da PI: 9.0676

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-31903	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.7	5.5e-10	73	110	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Han004473 73 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 110 664459******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.195	51	114	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	54	118	IPR001356	Homeobox domain
CDD	cd00086	1.71E-11	54	115	No hit	No description
SuperFamily	SSF46689	2.95E-17	55	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-29	57	120	IPR009057	Homeodomain-like
Pfam	PF05920	1.1E-18	71	110	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
NSAIMAASRG LGEEDNVGGA GKSSGSGSRL KFVDNQLRQQ RALQQLGMIQ HNAWRPQRGL 60 PERSVSVLRA WLFEHFLHPY PKDSDKHMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY 120 LEECKEHEQN RSEENKASKS EQSDDNPSSS KHRKSLSPES SKRGFNHPPP PQMTVSTTVS 180 TSPTANRINF QNASGFTLVN SSQMEGITQF SPKKPRNNER QQLQQQQQQQ QQSEVGFTIL 240 GNPTDFMGGL GGYPIGEIGR FTTEQLQPPY SSNTVSLTLG LPDCDNLSMS RAHQSFLPNQ 300 NIQQSNEFEA MNQASSSHST VMYETMDFQN QKRFX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	60	118	5	63	Homeobox protein Meis2
3k2a_B	2e-16	60	118	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022037131.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_022037132.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_022037133.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	5e-70	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A251UL26	0.0	A0A251UL26_HELAN; Putative POX domain, Homeobox KN domain-containing protein
STRING	EOY08486	1e-128	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-52	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]