PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002473 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | B3 | ||||||||||||
Protein Properties | Length: 254aa MW: 28806.1 Da PI: 10.3483 | ||||||||||||
Description | B3 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.3 | 3.9e-15 | 133 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k+++ s+v++ ++ lp +f +++ +k ++ +++ede+g++ + kli + y l++GW+eF+ ++L+egD+++F+l+++ +f +v ++r+ Han002473 133 FIKTMLGSHVTRCFWMGLPFRFGRSFL-PK-QDSLMVIEDENGEQSNCKLIAYR----YGLSAGWREFAVRHKLREGDVLIFQLVESCKF--KVYIVRA 223 89*********************9994.33.44589**************4444....55************************998888..8888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 127 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-22 | 128 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.50E-25 | 131 | 222 | No hit | No description |
Pfam | PF02362 | 4.8E-13 | 133 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 133 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-17 | 133 | 224 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAASPMNNTE PTPDLQLAIV EWKPPNLPEP FVTIAQLPPS KTSPLAPLTP SSELSGIRKR 60 KRLKPEKLEF SSIYVEKKRS SSKDKAVHDP SRRRLRLGKE NATKGCKAPV KISQAMIRAR 120 EVQSTLGNEH PTFIKTMLGS HVTRCFWMGL PFRFGRSFLP KQDSLMVIED ENGEQSNCKL 180 IAYRYGLSAG WREFAVRHKL REGDVLIFQL VESCKFKVYI VRANDLKEVD GAVSDITHNA 240 HERHMTTATI KQYX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 64 | RKRKRLKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.9916 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021972797.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A251UDD2 | 0.0 | A0A251UDD2_HELAN; Putative DNA-binding pseudobarrel domain-containing protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-34 | B3 family protein |