PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002313 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | B3 | ||||||||||||
Protein Properties | Length: 261aa MW: 29919.9 Da PI: 7.9904 | ||||||||||||
Description | B3 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4e-16 | 165 | 242 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v + +l lp +f++eh ++++ ++lede+g++ e +i +++ l++GW+ F+ +++L++gD ++F+ Han002313 165 FVKSMVRSHVYSCFWLGLPQRFCREHLP--KSTVSMVLEDEDGNECEAVFISSRT----GLSGGWRAFALEHKLDDGDALLFQC 242 89************************53..36789***************44444....4**********************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 157 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-20 | 159 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-21 | 163 | 240 | No hit | No description |
SMART | SM01019 | 6.0E-13 | 165 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 165 | 243 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.207 | 165 | 258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
XAGIFWNAIA IPSFFTLLGW LSFIALHLMA EEITSNSYEE ARKQQLLENK KRFEDLGILT 60 ISKTLSDLSK SEKKSKQREV KPKIRNGPVV EPRRSTRERN PIVSYQDDLD IGLPSIRRSK 120 SSSSWSSYLA RPLEEVRMAS YEAGIEAIKA AEKLQSNLQS EYPSFVKSMV RSHVYSCFWL 180 GLPQRFCREH LPKSTVSMVL EDEDGNECEA VFISSRTGLS GGWRAFALEH KLDDGDALLF 240 QCFTHKIQEY IVNHHMMEFR S |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.10261 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022000107.1 | 1e-144 | putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q9FHB2 | 3e-60 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A251SNT7 | 1e-143 | A0A251SNT7_HELAN; Putative DNA-binding pseudobarrel domain-containing protein | ||||
STRING | XP_009793972.1 | 1e-101 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-47 | B3 family protein |
Publications ? help Back to Top | |||
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