PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002027 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||
Protein Properties | Length: 274aa MW: 32009.9 Da PI: 8.2114 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.4 | 4e-55 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL++++ +k++++ ++i+evdiyk++Pw+Lp+k++++ekewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s ++ v Han002027 9 LPPGFRFHPTDEELIMFYLRNQALSKPCPV-SIIPEVDIYKFDPWELPEKTESGEKEWYFFTPRDRKYPNGARPNRAAVSGYWKATGTDKTIYS-ASKYV 106 79****************************.89***************99999*****************************************.9999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk+Lvfykgr pkg+ktdW+mheyrl Han002027 107 GVKKSLVFYKGRPPKGTKTDWIMHEYRL 134 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-65 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.565 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-27 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MVRKDNPNLP PGFRFHPTDE ELIMFYLRNQ ALSKPCPVSI IPEVDIYKFD PWELPEKTES 60 GEKEWYFFTP RDRKYPNGAR PNRAAVSGYW KATGTDKTIY SASKYVGVKK SLVFYKGRPP 120 KGTKTDWIMH EYRLNESKSQ PTKKIGSMRL DDWVLCRIYK KKSAERPLEQ REEHVSNQNV 180 PSDDHNAMEM QSKKIPRTFS LAHLWELESL GSISHLLDDD HTNYGNIGAT VPQSSTLFPE 240 TRFLEPHLVQ FEDEXHHNAY LTQTSFYNPM LQFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-71 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-71 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-71 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-71 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-71 | 8 | 166 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-71 | 8 | 166 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-71 | 8 | 166 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021997204.1 | 0.0 | NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 1e-119 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A251T1N8 | 0.0 | A0A251T1N8_HELAN; Putative NAC domain-containing protein | ||||
STRING | cassava4.1_013467m | 1e-117 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-109 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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