PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001282
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRAS
Protein Properties Length: 317aa    MW: 34690.9 Da    PI: 5.6229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32080662PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-58846PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.74.2e-481833171144
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav+++d+++a++l+++   la +++ +m+++a+yf+eALa+r++r    ly   p s+++    + +   +  f+e++P+lkf+h+taN 
  Han001282 183 LVHTLMACAEAVQQDDMKRAETLVKQAGYLAVSQAGAMRKVATYFAEALARRIYR----LY---PKSPQD--APAFRDLLQMHFYETCPYLKFAHFTANX 273
                689****************************************************....55...333332..23344444456***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144
                aIlea++g+++vH+iDf+++qG+QWpaL+ aLa Rp+gpp +R+
  Han001282 274 AILEAFAGKKKVHVIDFSMKQGMQWPALMXALALRPGGPPYFRL 317
                *****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.4E-3045116No hitNo description
PfamPF120414.2E-3045109IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098532.48157317IPR005202Transcription factor GRAS
PfamPF035141.5E-45183317IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKRDYPNQNH TLFPGSSSST PPLLPDLTGK SKMWDEFNEQ DAGDDELLAV LGYKVKSSDM  60
VDVAQKIEHL EGVLSNDDGL SQMASDSVHQ NPSDLSSWLE SMICELNPVV QVQLPGSGSI  120
AGSLVGTSTS PGSAGVDDLQ AIPGDAIYPP TKKQKSLSED NGNKTYSPNP IVIIDSQENG  180
IRLVHTLMAC AEAVQQDDMK RAETLVKQAG YLAVSQAGAM RKVATYFAEA LARRIYRLYP  240
KSPQDAPAFR DLLQMHFYET CPYLKFAHFT ANXAILEAFA GKKKVHVIDF SMKQGMQWPA  300
LMXALALRPG GPPYFRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2zsh_B2e-243714715107DELLA protein GAI
2zsi_B2e-243714715107DELLA protein GAI
5b3g_A8e-2317831714162Protein SCARECROW
5b3h_A8e-2317831713161Protein SCARECROW
5b3h_D8e-2317831713161Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021997373.10.0DELLA protein GAI1-like
SwissprotQ8S4W71e-122GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A251T3V40.0A0A251T3V4_HELAN; Putative DELLA protein GAI1
STRINGXP_010274729.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-110GRAS family protein