PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001210
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family B3
Protein Properties Length: 325aa    MW: 36685.5 Da    PI: 8.5949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48330541PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-18833PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-1320951393
               TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                g l+lp+ f++++ +++++++   tl + +   sW++kl   k ++ y ++ GW e vk+ gL+++D+vvF l++++ f  +
  Han001210 20 AGYLSLPNAFVRRYfNKIPKNP---TLVTaTGEHSWRMKL--VKIGEDYCFAHGWDELVKDAGLCSRDVVVFWLMDSRIF--R 95
               45699*********64444444...444415569******..9*****************************99876555..4 PP
2B341.81.9e-131442201589
                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 + lp kf+++ g++++es  ++l+d +g +W+++l+  +k+g+    y l++GW  F k  +L egD+ +F++d++++
  Han001210 144 YMLLPIKFVKAAGLEHKES--VKLKDHEGIEWTMRLTAHGKKGSpsvvYSLSAGWAMFRKHYKLSEGDVGTFTFDKQQG 220
                589******9999997775..***************996666667799*************************987544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-174104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-186108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.4898102IPR003340B3 DNA binding domain
CDDcd100176.48E-10999No hitNo description
SMARTSM010192.1E-1411102IPR003340B3 DNA binding domain
PfamPF023628.8E-111994IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-13126217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-13127219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.165130231IPR003340B3 DNA binding domain
CDDcd100172.44E-12131217No hitNo description
SMARTSM010190.013132231IPR003340B3 DNA binding domain
PfamPF023622.7E-10144220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSDQQESTPS FFKVIRYPSA GYLSLPNAFV RRYFNKIPKN PTLVTATGEH SWRMKLVKIG  60
EDYCFAHGWD ELVKDAGLCS RDVVVFWLMD SRIFRVSFLG ANGCEKYVPV NKTSDVVKDD  120
GKCHNDDANL CFERVFGHGS FKYYMLLPIK FVKAAGLEHK ESVKLKDHEG IEWTMRLTAH  180
GKKGSPSVVY SLSAGWAMFR KHYKLSEGDV GTFTFDKQQG XHKSTQLIKS KRPIKQETPM  240
GAQSCYGDAN VQIDDQWSPT EKPCSSGGAG VKVNKTRDEY DDVVKDDGKC HNDDDANLCF  300
ERVIGQRSFG YYMLLPTKFV KAAGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021972834.10.0B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A251UAF70.0A0A251UAF7_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-10B3 family protein