PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48958.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 635aa    MW: 74232.3 Da    PI: 8.7089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48958.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08428467345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE e l ++ +q+G++ Wk++a+ +g  + + ++k+ w+
       KHN48958.1 428 KWTPEEYEFLRKVKEQHGSD-WKSVAEALG--KHRFHVKDAWR 467
                      8*******************.********9..56677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.14352423IPR001005SANT/Myb domain
SMARTSM007170.32425472IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-8427487IPR009057Homeodomain-like
PROSITE profilePS500906.876428470IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-8428482IPR009057Homeodomain-like
PfamPF139212.0E-12429487No hitNo description
PROSITE profilePS500906.899471540IPR017877Myb-like domain
SMARTSM007173.7475542IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-5483559IPR009057Homeodomain-like
SuperFamilySSF466895.47E-5520598IPR009057Homeodomain-like
PROSITE profilePS500907.166542595IPR017877Myb-like domain
SMARTSM0071755546597IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MDEKAKKKGR KDEVMNINVA DDKEVQFLDD NQESKMKKRK KDDSSLNGIQ ELVFSKPSKK  60
MMKDNRLKSN KGKDDDQGKL MMKKKLSAEN QHVDHNEFKS NEDKDDGQYK KEEEEEEKKK  120
KKKKKKKKKL SEESKSKEYN EFESNDGGDD GKGKKMKKKK LCDKSKSKEN CEFNSKQMMK  180
QKKSDAENRH EGYNEFKSNE DKDDNQYKKE EKKRKKKKLS EESKSKDYNE FESNEGGDDD  240
LGKKRKKKKL SEESKDKEYN EFENNEGEDD GQGKKMKKKK LRDKSKNKEN SEFNSNEGDV  300
NEVDDQSKKM ETKKNAKADT GESPNPAHSG SSKPKRVTFS DQVDVCCDGL IRGKRFTPEE  360
DEKIKLAVFD YIESHGLGDE GLDMVLHCKS HPEIRDCWKE IGAALPQRPY VSVYTRAHIL  420
FERGEDRKWT PEEYEFLRKV KEQHGSDWKS VAEALGKHRF HVKDAWRRIK LTNTNQGRWT  480
QEEYQNLFDL VNLDLRVRAS QDYRKSKHGM LRDNIGWEAI GDKLTTRSSV LCCKKWYDKL  540
TSPMVANGVW SDTDDYRLVN ALFTLDACCM EEVDWDNLLE HRPGDVCRKR WNQMVQYIGE  600
HGGKSFAEQV EILAKRFCPD LLEVREAFDE KPVIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117129KKKKKKKKKKKKL
2119128KKKKKKKKKK
3120128KKKKKKKKK
4210218EKKRKKKKL
5242246KKRKK
6242248KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198132.10.0RNA polymerase I termination factor
RefseqXP_028198133.10.0RNA polymerase I termination factor
RefseqXP_028198134.10.0RNA polymerase I termination factor
RefseqXP_028198135.10.0RNA polymerase I termination factor
TrEMBLA0A0B2SVJ40.0A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
STRINGGLYMA13G19060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-125MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]