PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 12694.5 Da PI: 10.3549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.6e-10 | 18 | 61 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+ ++ + +++ +W++I++++ +t+ q++s+ k+ KHN47583.1 18 WTKEEHRSFLLGLEEYKESRWEKISEKFVPSKTPTQVVSHAKKF 61 *****************************9**********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.873 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-13 | 11 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-10 | 13 | 63 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-6 | 14 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 17 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-7 | 18 | 62 | No hit | No description |
Pfam | PF00249 | 1.0E-7 | 18 | 60 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MLSSGSSQSI HSKKYIHWTK EEHRSFLLGL EEYKESRWEK ISEKFVPSKT PTQVVSHAKK 60 FFKWKNAPKK ERKRRSIHET TLDDIDMIVT PHIDQHNWLP PPPNFAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47583.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028220306.1 | 7e-74 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A0B2SRR5 | 2e-72 | A0A0B2SRR5_GLYSO; Transcription factor MYB1R1 | ||||
TrEMBL | A0A445F1N6 | 5e-72 | A0A445F1N6_GLYSO; Transcription factor SRM1 | ||||
STRING | GLYMA08G45255.1 | 1e-36 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13860 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 3e-16 | MYB family protein |
Publications ? help Back to Top | |||
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