PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN47559.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34311.8 Da PI: 8.167

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN47559.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	163	217	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ L+k+l+L rqV vWFqNrRa+ k KHN47559.1 163 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALSKQLNLRPRQVEVWFQNRRARTK 217 788899***********************************************98 PP
2	HD-ZIP_I/II	123	1.5e-39	163	252	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l KHN47559.1 163 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 252 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.248	159	219	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	161	223	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-18	162	227	IPR009057	Homeodomain-like
CDD	cd00086	9.35E-17	163	220	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-17	163	217	IPR009057	Homeodomain-like
Pfam	PF00046	7.4E-16	163	217	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	194	217	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.2E-10	219	253	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.8E-25	219	262	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MMGLDQDASS NSGLQLILGL ALTATTTTTP SSPPSISNKL DHVDHHHHLI TLRPTTKSSY 60 NSSEAEPSLT LGLSRESYLK VPKSIIGHNN NKVSSCDDPL DLSTQTNSPH HSAVSSFSSG 120 RVKRERDLSC EEVVDAKEID QRDLSCEGII RATEEEEDGA ATRKKLRLTK EQSALLEESF 180 KQHSTLNPKQ KQALSKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCETLTDENR 240 RLQKELQELK ALKLAQPLYM PMPAATLAMC PSCERLGGSA VNGAGGSPKT SFSMAPKPHF 300 FNPFANPSAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	167	TRKKLRL
2	211	219	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN47559.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031173	0.0	KT031173.1 Glycine max clone HN_CCL_18 homeodomain/HOMEOBOX transcription factor (Glyma17g16930.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028232238.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-88	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0B2SSQ1	0.0	A0A0B2SSQ1_GLYSO; Homeobox-leucine zipper protein HAT22
STRING	GLYMA05G23150.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-75	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]