PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 117aa MW: 13130 Da PI: 7.6148 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 93 | 4.5e-29 | 1 | 112 | 258 | 374 |
GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.s 355 +e+l++ysa+fdslea++p + ++r+ vEr++lg++iv +a g+e e+ ++W e+l++aGF+ vp+s + +qakll+ ++ dgyrvee KHN47045.1 1 MESLHHYSAVFDSLEAGFPMQGRARALVERVFLGPRIVGSLARMGEE-----EERGSWGEWLGAAGFRGVPMSFANHCQAKLLIGLFN-DGYRVEELgT 93 69********************************************9.....88899*******************************.******9868 PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 + lvl Wk+r+L+s+S W+ KHN47045.1 94 NKLVLDWKSRRLLSASLWT 112 9999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.206 | 1 | 92 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-26 | 1 | 112 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MESLHHYSAV FDSLEAGFPM QGRARALVER VFLGPRIVGS LARMGEEEER GSWGEWLGAA 60 GFRGVPMSFA NHCQAKLLIG LFNDGYRVEE LGTNKLVLDW KSRRLLSASL WTQINSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-14 | 1 | 112 | 264 | 379 | Protein SCARECROW |
5b3h_A | 3e-14 | 1 | 112 | 263 | 378 | Protein SCARECROW |
5b3h_D | 3e-14 | 1 | 112 | 263 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47045.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 8e-97 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527930.2 | 1e-73 | nodulation-signaling pathway 2 protein | ||||
Refseq | XP_028235850.1 | 1e-73 | nodulation-signaling pathway 2 protein-like | ||||
Swissprot | Q5NE24 | 4e-61 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A445K7Z1 | 3e-72 | A0A445K7Z1_GLYSO; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | K7KUH0 | 3e-72 | K7KUH0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G11610.2 | 6e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6264 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 4e-33 | GRAS family protein |
Publications ? help Back to Top | |||
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