PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 26900.8 Da PI: 8.8538 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 8.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ +qvtf kRr g+lKKA+E+SvLCda+va+iifs++gkl+eyss KHN46661.1 9 KRIENKTSQQVTFFKRRSGLLKKASEISVLCDAQVALIIFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.2 | 7.3e-25 | 87 | 161 | 14 | 88 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++ e+ kL +++e L+r++ ++ G+dL++LslkeL++Leqq+e+slk+iR++Kn+++ +++++l kk+ke KHN46661.1 87 PGFWSFEHIKLTAKVEVLERNIMNFFGNDLDPLSLKELHSLEQQIETSLKRIRTRKNQVMNQSVSDLHKKMKEKA 161 467999****************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.333 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.57E-39 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-30 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.283 | 87 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.4E-21 | 89 | 159 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRGRVQLKR IENKTSQQVT FFKRRSGLLK KASEISVLCD AQVALIIFST KGKLFEYSSE 60 RSMEDLLERY ERCSHTALAG ANNVESPGFW SFEHIKLTAK VEVLERNIMN FFGNDLDPLS 120 LKELHSLEQQ IETSLKRIRT RKNQVMNQSV SDLHKKMKEK AKTVTEGPHN GPETLGFDSS 180 TLNLSSPQLP PPPSPQRLVP SLTLSETMQG GTPVEETGEA QTVPSGNSLI PPWMLRCMSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 4e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 4e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 4e-18 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46661.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098571 | 0.0 | BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340272.1 | 1e-162 | MADS-box protein Dt2 | ||||
Refseq | XP_006602964.1 | 1e-162 | MADS-box protein Dt2 isoform X2 | ||||
Refseq | XP_028213064.1 | 1e-162 | truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Swissprot | D7SMN6 | 4e-72 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A0B2SIV8 | 1e-177 | A0A0B2SIV8_GLYSO; Agamous-like MADS-box protein AGL8 like | ||||
STRING | GLYMA18G50910.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 3e-65 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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