PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 445aa MW: 51028.8 Da PI: 6.6185 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84 | 1.9e-26 | 118 | 212 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d KHN46420.1 118 KWTDKMVRLLITAVSYIGEDVTADGgssgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLD 212 7******************99986445677888899**********************************************5588888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.0E-24 | 116 | 241 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEGNLPQGGI IQGGTSFGGF DLPIRVQHQA QHPHTMHQHQ THPRQGSSVH STVHDGFPLT 60 MGTMQNCDQT ISLTDFSKGD RSKNSASEED EPSYTEDGVD CHHETTRGKK GSPWQRVKWT 120 DKMVRLLITA VSYIGEDVTA DGGSSGRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED 180 KFNDLNKRYK KLNDMLGRGT SCQVVENPAL LDVIDFLSEK EKDDVRKILS SKHLFYEEMC 240 SYHNGNRLHL PHDPALQRSL QLALRNRDDH DDDIRRSHHD DHDEDDQDAE IDDHDDFEEN 300 CASHGDSRGI YGPSGGSMKK LKQCQGQEDA NTFGKSLNCQ EYNKSSYPHG QMIQSDVNQG 360 LPEGMRAAWL QKQWVESHTL QLEEQKLQIQ VEMLELEKQR FKWQRFSKKK DRELEKLSLE 420 NERMKLENER IALELKRKEM GTGFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556151.1 | 0.0 | uncharacterized protein LOC100816474 | ||||
Refseq | XP_028221224.1 | 0.0 | uncharacterized protein LOC114402756 | ||||
TrEMBL | A0A0B2SNA2 | 0.0 | A0A0B2SNA2_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1NH20 | 0.0 | I1NH20_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G30630.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-167 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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