PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 883aa MW: 99800.5 Da PI: 6.7041 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.6 | 3.2e-16 | 60 | 135 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYA+++GFs ++ +sk +ge + r+fvC eg +++ +++ C+a+++++++ ++kw+vtk+++eH+H ++ KHN46338.1 60 NFYNEYARHMGFSSKVGPYGRSKADGENMYREFVCGGEGLKKSPNES--------------CNAMIRIELKGQNKWVVTKFVKEHSHYMV 135 6***************************************9998777..............**************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-12 | 60 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-28 | 275 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.14 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-9 | 559 | 587 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.5E-6 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
MDVQVINVEV SGHQTKADDG DAEPSDGEVN NAENYGSHVE DEISEPHVGM EFGSEDVAKN 60 FYNEYARHMG FSSKVGPYGR SKADGENMYR EFVCGGEGLK KSPNESCNAM IRIELKGQNK 120 WVVTKFVKEH SHYMVSSSKA HSRRPSKHFS SVGRTMPETY QGVGLVPSGV MYVSMDGNRV 180 SNQNTRGVKN IHTAAAERSH LVKNSTLMNY SVRPCSQNKT LGRDAHNLLE YFKKMQAENP 240 GFFYAIQLDE ENRMSNVFWA DARSRTAYSY YGDTVHLDTT YKVNQYRVPF APFTGVNHHG 300 QMVLFGCALI LDDSEASFLW LLKTFLTAMN DRQPISITTD QDRAMQTAVS QVFPQARHCI 360 SKWQILREGQ EKLAHVCLAH PNFQVELYNC INLTETIEEF ESSWNFILNK YELRGNDWLQ 420 SLYNARAQWV PAYFRDSFFA AISPTQGFDG SFFDGYVNQQ TTLPLFFRQY ERALESWIEK 480 EIEADFETVS TTPVLKTPSP MEKQAANLYT RKIFSKFQDE LVETFVYTAN RIEGDGPNST 540 FRVAKFEDDQ KAYMVTLNHS ELKANCSCQM FEYAGILCKH ILTVFTVTNV LTLPPHYILK 600 RWTRNAKNSA GLDEHTGESH AQESLTARYG NLCKEAIRYA EEGSVTVETY NAAISGLREG 660 VKKVANVKKS VAKVTPPNNQ ASGTAYDDRK TTPTLDTTPL LWPWQDEITR RFNLNDAGGP 720 VQSVADLNLP RMAPVSLHRD DGPSENMVVL PCLKSMTWVM ENRNSTPGNK VAVINLKLQD 780 YSRAPSAESE VKFHLSRVTL EPMLKSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSHAVSVP FLLSLIIYRM HMI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46338.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028219760.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0B2SNE8 | 0.0 | A0A0B2SNE8_GLYSO; Protein FAR1-RELATED SEQUENCE 3 | ||||
STRING | GLYMA20G11710.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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