PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45516.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 349aa    MW: 39759.4 Da    PI: 6.8371
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45516.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.7e-5681341129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL +kv ++ + + ++i e+d++k+ePwdLp ++k +ekewyfF+ rd+ky+tg+r+nrat +gyWkatgkd+e+++  ++l
  KHN45516.1   8 LPPGFRFHPTDEELITHYLSQKVLDSCFCA-RAIGEADLNKCEPWDLPCMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDREIYK-AKTL 104
                 79************************9888.89***************8888899***************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 +g+kktLvfykgrap+gek++Wvmheyrle
  KHN45516.1 105 IGMKKTLVFYKGRAPSGEKSNWVMHEYRLE 134
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-635158IPR003441NAC domain
PROSITE profilePS5100558.6488158IPR003441NAC domain
PfamPF023657.6E-309133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEQRFELPP GFRFHPTDEE LITHYLSQKV LDSCFCARAI GEADLNKCEP WDLPCMAKMG  60
EKEWYFFCVR DRKYPTGQRT NRATGAGYWK ATGKDREIYK AKTLIGMKKT LVFYKGRAPS  120
GEKSNWVMHE YRLENEHSVQ NPPKKAMNDW AICRIFQKSN CGKKMPISRL LRFSTFAKDI  180
PSLMDSSPNN NNNSESKPVL GESSHATCFS DPNQSEDKKT ENENIAESYE IIMLASSYSS  240
NPSDVSPDSW TFSKSAPTVS HQSLQVGNSH CSDYFMLHQE QSMLGMLIEN HGSSTGQRTQ  300
KAQDNNKDFD ADMSSVMYNN NEMFQRSFGN QEYSSPSVGH VYSSGLWGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-55516414171NO APICAL MERISTEM PROTEIN
1ut4_B3e-55516414171NO APICAL MERISTEM PROTEIN
1ut7_A3e-55516414171NO APICAL MERISTEM PROTEIN
1ut7_B3e-55516414171NO APICAL MERISTEM PROTEIN
3swm_A4e-55516417174NAC domain-containing protein 19
3swm_B4e-55516417174NAC domain-containing protein 19
3swm_C4e-55516417174NAC domain-containing protein 19
3swm_D4e-55516417174NAC domain-containing protein 19
3swp_A4e-55516417174NAC domain-containing protein 19
3swp_B4e-55516417174NAC domain-containing protein 19
3swp_C4e-55516417174NAC domain-containing protein 19
3swp_D4e-55516417174NAC domain-containing protein 19
4dul_A3e-55516414171NAC domain-containing protein 19
4dul_B3e-55516414171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45516.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-98AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554895.20.0NAC domain-containing protein 92
RefseqXP_028217622.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-110NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A445FBF20.0A0A445FBF2_GLYSO; NAC domain-containing protein 100 (Fragment)
TrEMBLI1N6660.0I1N666_SOYBN; Uncharacterized protein
STRINGGLYMA19G02850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-107NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]