PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN45461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 67aa MW: 8074.37 Da PI: 11.6503 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.5 | 7.1e-06 | 5 | 62 | 1 | 54 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRak 54 r+kRttf++eq + L ++ e+ +p +e++ e+ + + g+t r vW N R + KHN45461.1 5 RKKRTTFSSEQKNKLIRFAESvGWKPRKEKKDEIESFCsemGITRRMFVVWLSNNRHR 62 89*************99888677788877777776665555**************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.155 | 2 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 2 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.43E-15 | 2 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-20 | 4 | 60 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 67 aa Download sequence Send to blast |
MRSKRKKRTT FSSEQKNKLI RFAESVGWKP RKEKKDEIES FCSEMGITRR MFVVWLSNNR 60 HRAINNA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN45461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006593246.1 | 3e-42 | zinc-finger homeodomain protein 5 | ||||
Refseq | XP_028193349.1 | 3e-42 | zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A445HRE0 | 7e-41 | A0A445HRE0_GLYSO; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | K7LVE2 | 7e-41 | K7LVE2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G29010.2 | 1e-41 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15282 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75240.1 | 3e-15 | homeobox protein 33 |