PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN45185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 35320.3 Da PI: 8.678 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.9 | 2.4e-50 | 19 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPtdeelv +yL++kv++k+l++ e ik+vdiyk++PwdLpk + ++kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk++++ +e KHN45185.1 19 LPGFRFHPTDEELVGFYLQRKVDKKPLKI-ELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVkePHE 116 69***************************.89***************6666699**************************************9744556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+ktdW+mhe+rl KHN45185.1 117 CIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146 6***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-55 | 14 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.481 | 18 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNVKVHSSDD TKKDEEVVLP GFRFHPTDEE LVGFYLQRKV DKKPLKIELI KQVDIYKYDP 60 WDLPKVNSFG DKEWYFFCIR GRKYRNSVRP NRVTRSGFWK ATGIDKSIYC VKEPHECIGL 120 KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KSSPNDVQEA EVWTLCRIFK RIPSFKKYAP 180 NLKDSTPATK PNPVNSNASI LDSDNCCKPY LICRDPMMMQ QIERKPVIGQ VDEKKHLFLG 240 QFGPLSHLQA PSTTPYPNFW NQNNVEDHAF ANENWDDLRS VVQFAIDPST VFDCTETYIP 300 PYFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 20 | 177 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 20 | 177 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN45185.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093838 | 0.0 | BT093838.1 Soybean clone JCVI-FLGm-14E12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028213211.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 9e-87 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0B2SJG9 | 0.0 | A0A0B2SJG9_GLYSO; NAC domain-containing protein 42 | ||||
STRING | GLYMA18G13574.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-89 | NAC domain containing protein 42 |