PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 507aa MW: 52625.9 Da PI: 7.5974 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KHN44500.1 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +++ KHN44500.1 136 WKCDKCSKKYAVQSDWKAHSKVC 158 58*****************9877 PP | |||||||
3 | zf-C2H2 | 11.7 | 0.0008 | 166 | 184 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + KHN44500.1 166 DCGTVFSRRDSFITHRAFC 184 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.03E-7 | 59 | 82 | No hit | No description |
SMART | SM00355 | 0.017 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.1E-5 | 60 | 82 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.03E-7 | 131 | 156 | No hit | No description |
SMART | SM00355 | 150 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MPVDLDNAST ASGEAASVSS SGHQTKPAVP KKKRNLPGMP DPEAEVIALS PTALLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV YVCPEPTCVH HDPARALGDL 120 TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH 180 RAFCDVLAEE NVRSHAVVKD NSENDSKVLT LTGDSPPLQP VSATTTQTNS AMSCGLQTQN 240 LELPETNPPQ VIEEEPQGAT AVSGSCGSNS TCSTSNGGAT SNSNSSSSVF AGLFASSTAS 300 GSLQSQTPAF SDLIRAMGPP EHPADLISAP SSSEAISLCL STTSASPIFA TGGQQYVSSP 360 PQPAMSATAL LQKAAQMGAA ATNASLLRGF GIVSSSSLAS TSSGQQNGLQ WGQQQLESES 420 GSVPAAGLGL GLPCEDGGSG LKELMMGTPS MFGPKHTTLD FLGLGMAAGG TAGGGLSALI 480 TSIGGGLDVT AAFGNGDFSG KDIGGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 132 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 132 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547992.1 | 0.0 | protein indeterminate-domain 2 | ||||
Refseq | XP_028207144.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9LVQ7 | 1e-173 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A0B2SHH5 | 0.0 | A0A0B2SHH5_GLYSO; Zinc finger protein MAGPIE | ||||
STRING | GLYMA16G25550.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-143 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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