PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44465.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 393aa MW: 45333.3 Da PI: 8.7519 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 137 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ F +++ L++H + H KHN44465.1 137 YRCKVCGRKFYTNDKLVNHFKQlH 160 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.84E-6 | 133 | 162 | No hit | No description |
SMART | SM00355 | 0.0035 | 137 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.3 | 137 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.40.50.1010 | 4.6E-7 | 140 | 161 | IPR029060 | PIN domain-like |
CDD | cd06167 | 8.77E-15 | 154 | 278 | No hit | No description |
Pfam | PF01936 | 4.9E-8 | 209 | 288 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 4.6E-7 | 212 | 277 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MVSYTSYFIY RRAENPLQIL KFRSIFFFSL EATCWQTYGT LRHCHSGSER GKNQKLTNRV 60 GLFWDLDNKP PNSIPPYEVA NKLRIAASSF GVVRYMVAYA NSHTFSHVPQ GVRESRKEKE 120 LLYRLENKGV IKPNQPYRCK VCGRKFYTND KLVNHFKQLH ESEHTKRMNQ IKSARGSRRV 180 KLVAKYSMKM EKYKKAASDI LTPKVGYGLA DELKRAGFWV RTVSDKPQAA DQALQSHIVD 240 IMDHRRVECV VLVSDDSDFV DVINEAKMRC LKTVVIGDID EGFLKRTADT AFSWEEILMG 300 KAKKQAVSVV KNWKDRDILK KLEWTYNPDE DKSNFNLDDT VTEASEDDNI EDTTCDEVDD 360 AYKDDRGSWW ELDSDDDATT RQSGKLSGLS VNR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44465.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196172.1 | 0.0 | uncharacterized protein LOC114381179 | ||||
TrEMBL | A0A445HI67 | 0.0 | A0A445HI67_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA11G36770.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-136 | C2H2 family protein |
Publications ? help Back to Top | |||
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