PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44071.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 265aa    MW: 29736.2 Da    PI: 9.1902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44071.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C++sFs+   L  H++ H
  KHN44071.1  4 HKCKLCSRSFSNGRALGGHMKAH 26
                79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.0E-8327IPR007087Zinc finger, C2H2
SuperFamilySSF576674.33E-5329No hitNo description
PROSITE profilePS5015710.99431IPR007087Zinc finger, C2H2
SMARTSM003550.028426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM00355190163183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.53E-5201227No hitNo description
PfamPF139123.4E-12203227IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598204226IPR007087Zinc finger, C2H2
SMARTSM003550.2204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDRHKCKLCS RSFSNGRALG GHMKAHLATL PLPPKPHSYS SSSDSEQEQE QESLNYALRE  60
NPKKSFRVAD PEDRESETES RNPTRQRSKR NRKSTMPKLT PPPHPEPEPL SSVSDTSPEE  120
DVAMCLMMLS RDTWQQHKHA NAATPKRRCS SGSEIKKNVR GNHLCHKCHK SFRSSRAFGS  180
HRNVCCPREE GQNNYNNNRS TKVFECPFCY KVFGSGQALG GHKRSHLIPS SSSTVNDSVK  240
LKHSFIDLNL PAPAEDDDLS VVSDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44071.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671261e-146KC967126.1 Glycine max C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525852.10.0zinc finger protein ZAT4
RefseqXP_028231766.10.0zinc finger protein ZAT4-like
TrEMBLA0A0B2SBE50.0A0A0B2SBE5_GLYSO; Zinc finger protein ZAT9
TrEMBLI1K0Q60.0I1K0Q6_SOYBN; Uncharacterized protein
STRINGGLYMA05G04690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-39C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]