PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43870.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 591aa    MW: 64009.9 Da    PI: 7.7896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43870.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-32236293260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  KHN43870.1 236 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 293
                 8****************************************.***************85 PP
2WRKY106.21.7e-33410468159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  KHN43870.1 410 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 468
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996230294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-27230294IPR003657WRKY domain
SuperFamilySSF1182903.01E-25232294IPR003657WRKY domain
SMARTSM007742.3E-34235293IPR003657WRKY domain
PfamPF031068.0E-25236292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37395470IPR003657WRKY domain
SuperFamilySSF1182902.22E-29402470IPR003657WRKY domain
PROSITE profilePS5081138.825405470IPR003657WRKY domain
SMARTSM007743.1E-39410469IPR003657WRKY domain
PfamPF031063.6E-26411468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDGTTNSGEP RSSSVLQNTG ASEDPNRSGS GQNSTARYKL MSPMSPAKLP ISRSPCITIP  60
PGLSPTSFLE SPVLLSNMKA LGFAGGGFTN YRVPPQAPTN STWFYGFCCP VTTACFNTNT  120
VDARKSSFFE FKPLNRSNKV PADFNNHVSK QSTQVEGPGK AQSFASSPLV ESEITVPSNE  180
LSLSSPVQMV SSSASAPVDV DLDEINHKGN TATGLQASHV EVRGSGLSVA AEKTSDDGYN  240
WRKYGQKLVK GSEFPRSYYK CTHPNCEVKK LFERSHDGQI TEIVYKGTHD HPKPQSSCRY  300
STGTVMYIQG ERSDKASLAG RDDKASTMYG QVSHAAEPNS TPESSPVATN DDGLEGAGFV  360
SNRNNEEVDD DDPFSKRRKM ELGNVDITPV VKPIREPRVV VQTLSEVDIL DDGYRWRKYG  420
QKVVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP AARNSSHDMA  480
VPAATAGGQT RIKLEESDTI SLDLGMGISS AAEHRSNGQG KMLHSELGET QTHASNSNFK  540
FVHTTSAPVY FGVLNNSSNP YGSRDNRSDG PSLNHSSYPC PQSMGRILLG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37236471878Probable WRKY transcription factor 4
2lex_A3e-37236471878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753500.0EU375350.1 Glycine max transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519618.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028221428.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-176WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0B2SFS80.0A0A0B2SFS8_GLYSO; Putative WRKY transcription factor 20
STRINGGLYMA02G46690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-172WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]