PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 333aa MW: 37234.1 Da PI: 7.1537 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.3 | 9.8e-22 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ KHN43009.1 77 STRWSPTPVQLLVLEELYKQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 137 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.4 | 2.4e-36 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Ptp Q+ +Leelyk+G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ KHN43009.1 76 HSTRWSPTPVQLLVLEELYKQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 139 689***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.05 | 73 | 138 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-13 | 73 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.4E-7 | 75 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.6E-19 | 78 | 137 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-10 | 78 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.07E-6 | 78 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MSDSFGSTFH SSAPNSTLNS HAPPKITTFC SIAQPYCICT HCNHILTFNH HVGNLAEEGT 60 NSTGSHNNNV QSQPQHSTRW SPTPVQLLVL EELYKQGTKT PSAEQIQQIA SQLRQFGKIE 120 GKNVFYWFQN HKARERQKRR RREMEENNNN NAAASSSSGE GLKETGCGVK ETKKWASTSN 180 CSGHAEESAL DIAEKGSNGW TQFEERGSIQ VLRRNISEKQ AKLQEMEMPC FLPITIAAPT 240 TTSHRTTTHN TQLLSPQNYN NLSSSLINRE SLNYYGGDEN ADSRTLDLFP HKRDDQDGIS 300 LAERKSSSML CASASMDTEI TSNQFFEFLP LRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43009.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 5e-76 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583912.1 | 0.0 | WUSCHEL-related homeobox 6 | ||||
TrEMBL | K7L352 | 0.0 | K7L352_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G34425.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15154 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 1e-28 | WOX family protein |
Publications ? help Back to Top | |||
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