PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42627.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 558aa MW: 62418.4 Da PI: 6.3929 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.3 | 7e-28 | 313 | 367 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++ KHN42627.1 313 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 367 5689*****************.********************************86 PP | |||||||
2 | Response_reg | 27.4 | 1.7e-10 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+ + + + + +r+ le +y +v ++ d eal l + +++ ++ ++ + + G+++l++ +++lp i+ + + +++ +++ +Ga KHN42627.1 20 VLLLEGDSSSAAEIREQLEAVDY-NVSTFYDENEALSALSSSPegFHVAIVEVSTSCsLGGFKFLEN----SKDLPTIMTSKDQCLNTMMKCIALGA 111 67777788888999*********.***************888888*******999998899998864....45899999999999************ PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +flsKp ++++l + KHN42627.1 112 VEFLSKPLSEDKLKN 126 ***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 9.25E-15 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.2E-16 | 16 | 139 | No hit | No description |
PROSITE profile | PS50110 | 20.258 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-7 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.20E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 15.958 | 310 | 369 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 311 | 370 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.85E-18 | 312 | 369 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-25 | 313 | 368 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 316 | 365 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MVCTANDLQE WKDFPKGLRV LLLEGDSSSA AEIREQLEAV DYNVSTFYDE NEALSALSSS 60 PEGFHVAIVE VSTSCSLGGF KFLENSKDLP TIMTSKDQCL NTMMKCIALG AVEFLSKPLS 120 EDKLKNIWQH VVHKAFNAGA NVLSESLKPV KESVESMLQL QTENGQDKSR ISIDLENVSR 180 FSDIDHEQSA VCDKYPAPST PQLKQGTRLL DDGDCHDQTN CSTEKESVEH DGECKSVETL 240 CENLNAESSP QPREPDKTLI KEEEDFANGS RGESAVSLSP NNKKFLSNAD GNTSPNRTGV 300 LNDSCEIKAN RKKMKVDWTP ELHKKFVKAV EQLGIDQAIP SRILEIMKVE GLTRHNVASH 360 LQKYRIHKRQ SAPGEEDRKW HNQRDAMQRN YYMQRPIMAY PPYHSNHTLS PAPIYPMWGQ 420 PGSQTAGVQI WGHPGYHIWH PTESWHWKPY QGVHVDAWGC PLLPAPQAPC FPYNQNIPGL 480 HNPKAVDYRF GMPQSSFEHH PAEEVVDKVV KEAISKPWLP LPLGLKPPSM DSVLAELSKQ 540 GISGIPLGNK RSSTPKLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-16 | 318 | 367 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42627.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-139 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028245394.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Refseq | XP_028245402.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Swissprot | Q6LA43 | 1e-140 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A445M5R9 | 0.0 | A0A445M5R9_GLYSO; Two-component response regulator-like APRR2 isoform A | ||||
STRING | GLYMA01G40900.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-137 | ARR-B family protein |
Publications ? help Back to Top | |||
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