PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20447.8 Da PI: 9.7017 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.6e-09 | 2 | 40 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i + f L l+P + kK++Ka++L A++++k+Lq KHN42603.1 2 RREKISQQFVALSALIPDL-----KKMDKASVLGDAIKHVKQLQ 40 *******************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 2.5E-7 | 1 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.735 | 1 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 2 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.64E-7 | 2 | 44 | No hit | No description |
Pfam | PF00010 | 1.4E-6 | 2 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-13 | 2 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRREKISQQF VALSALIPDL KKMDKASVLG DAIKHVKQLQ EQVKLLEEKN KRKRVVESVV 60 YVKKSKLSAA EDVFNTFSNS GDGNSYDISE TKTNESFPEV EARVLEKHVL IRIHCGKQKG 120 LFINILKDIE NLHLSVINSS ILLFGTSKLD ITIVAEMDEE FSLSVKELAR KLRIGLMQFM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42603.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573685.1 | 1e-125 | transcription factor bHLH18 | ||||
Refseq | XP_028245038.1 | 1e-125 | transcription factor bHLH18-like | ||||
TrEMBL | A0A445M636 | 1e-124 | A0A445M636_GLYSO; Transcription factor bHLH25 | ||||
TrEMBL | K7K4T3 | 1e-124 | K7K4T3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G40611.1 | 1e-124 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 5e-39 | bHLH family protein |
Publications ? help Back to Top | |||
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